HsaEX1029673 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131484686-131486182:+
Coord C1 exon
chr9:131484686-131484790
Coord A exon
chr9:131484948-131485140
Coord C2 exon
chr9:131486085-131486182
Length
193 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCTTGCTTCTGAAGATG
3' ss Score
7.91
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCAGGGTTAACACAGAGTATCCCCATCCTGCGGCGGGACCATCACATCCAGAGGGCCATCGGTCTCTCCCCAATGTCCTTCCCCACCGCCGACCTTACTCTGAAG
Seq A exon
ATGGAGTCTGCGCGCAAGGCTTGGGAAAACTCCCCCAGTTTGCCGGAGCAGAGCTCTCCAGGCGGCGCTGGCTCAGGCATCCAGCCTCCATCCTCTGTGGGTGCCTCCAGCGGGGTCAACTACAGCTCCTTCGGTGGAGTGTCCATGCCACCCATGCCTGTGGCCTCTGTAGCACCTTCTGCTTCTATGCCAG
Seq C2 exon
GCAGCCACCTCCCGCCCCTGTACCTGGATGGCCATGTGTTTGCAAGTCAGCCCCGGCTGGTTCCTCAAACGATACCTCAGCAGCAGAGTTACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.598 C2=0.430
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTTAACACAGAGTATCCC
R:
TGTTGGTAACTCTGCTGCTGA
Band lengths:
202-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains