DreEX6014815 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71243232-71244503:-
Coord C1 exon
chr5:71244402-71244503
Coord A exon
chr5:71243523-71243700
Coord C2 exon
chr5:71243232-71243326
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCCATTGTGTGCAGATG
3' ss Score
8.59
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
GCGGGCCTGACTCAAGCCATCCCGATGCTGCGCAGAGATCACCTGCAGCCCGCCATTACCCTGAACCCCATCAGCTTCCCCTCCGCTGACCTCACGCTCAAG
Seq A exon
ATGGAGTCCGCCAGGAAGGCGTGGGAGAACTCTCAGGCTGTGCCGGAGCAGGGGTCTCCAGGCTCCGGCTCTTCAGCTCAGCCGGTCTGCAGTGTGGGCTCCTCCAGCGTCAGCTACAGCTCCTTCTCCATGCCACCCATGCCTGTGGCGTCTGTGGCCCCGTCCGTCTCCATGCAGG
Seq C2 exon
GCAGCCACATCCCTCCTCTGTATCTGGATGGTCATGTGTTTCCCAGTCAGCCTCGTCTGGTGCCGCCGCTCACCCAGCAGCCCAGCTACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'30-35,'30-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.483 C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGACTCAAGCCATCC
R:
CTGCTGGTAGCTGGGCTG
Band lengths:
194-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]