GgaEX0005024 @ galGal3
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6835824-6837847:+
Coord C1 exon
chr17:6835824-6835928
Coord A exon
chr17:6836503-6836695
Coord C2 exon
chr17:6837750-6837847
Length
193 bp
Sequences
Splice sites
3' ss Seq
ATCGCCCTTCATTTCCATAGATG
3' ss Score
8.86
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCAGGGTTAACGCAGTCCATTCCCATTCTGCGAAGAGATCACCACCTTCAGAGGTGCATTGGCCTGAACCCAATGTCCTTCCCCACTGCAGAGCTTACTCTTAAG
Seq A exon
ATGGAGTCTGCTCGTAAGGCTTGGGAAAACTCTCCTAGTTTACCAGAACAGAACTCTCCAGGAGGTGCAGGCTCAGGCATCCAGCCTCCTTCCAGTGTTGGAGCTTCCAACGGTGTCAGCTACAGCTCTTTTGGCGGAGTTTCTATGCCTCCTATGCCTGTGGCGTCCGTAGCACCTTCTGCATCTATTCCAG
Seq C2 exon
GTAACCATATTCCCCCCCTGTATCTGGATGGCCACGTATTTGCAAGTCAGCCCCGTCTGGTTCCTCAGACGATACCTCAGCAGCAAAGCTACCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX3-2/3=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.662 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGTTAACGCAGTCCATT
R:
TGTTGGTAGCTTTGCTGCTGA
Band lengths:
202-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]