BtaEX6046915 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010805 | POMT1
Description
Bos taurus protein-O-mannosyltransferase 1 (POMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080330]
Coordinates
chr11:101656574-101662054:+
Coord C1 exon
chr11:101656574-101656669
Coord A exon
chr11:101660185-101660277
Coord C2 exon
chr11:101661958-101662054
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCGCCCGTGCTCTCTTCCAGGCA
3' ss Score
9.95
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATATGAGAACGGCCGTGGCAGCTCCCACCAGCAGCAGGTGACCTGCTACCCCTTCAAGGATGTCAACAACTGGTGGATTGTCAAGGACCCCGGGAG
Seq A exon
GCACCAGCTGGTGGTGAACAACCCCCCGAGGCCCGTGCGGCACGGCGACGTTGTGCAACTGGTGCACGGCATGACCACCCGCCTCCTCAACAC
Seq C2 exon
GCATGATGTCGCAGCCCCCCTGAGCCCCCACGCGCAGGAGGTTTCCTGCTACATTGACTACAATATCTCCATGCCCCCCCAGAACCTCTGGCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010805-'21-22,'21-18,24-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=FE(17.6=100)
C2:
PF0281514=MIR=FE(18.2=100)
Main Skipping Isoform:
ENSBTAT00000014315fB5384
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAGAACGGCCGTGGCAG
R:
GGGGGCATGGAGATATTGTAGT
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]