DreEX6013220 @ danRer10
Exon Skipping
Gene
ENSDARG00000067670 | pomt1
Description
protein-O-mannosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060929-966]
Coordinates
chr5:50474052-50474577:+
Coord C1 exon
chr5:50474052-50474147
Coord A exon
chr5:50474255-50474347
Coord C2 exon
chr5:50474481-50474577
Length
93 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTTTTTTTTTCAGGCA
3' ss Score
11.18
5' ss Seq
CACGTAATA
5' ss Score
1.72
Exon sequences
Seq C1 exon
GTATGAAAATGGCCGTGGAAGCTCCCACCAGCAGCAGGTGACCTGCTATCCTTTCAAAGATGTCAACAACTGGTGGATTATCAAAGACCCTGGGCG
Seq A exon
GCAAAGTCTTGTGGTCAGCAGCCCACCCAAACCTGTCAGACATGGGGATATTATTCAGTTGCTGCATGGAATGACAACTCGCTACCTGAACAC
Seq C2 exon
ACATGATGTTGCAGCCCCCATGAGTCCTCACTCACAGGAAGTGTCGGGCTATATTGATTTTAACGTGTCTATGCCAGCTCAGAATCTCTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067670-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.094 C2=0.076
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=FE(17.6=100)
C2:
PF0281514=MIR=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAATGGCCGTGGAAGCT
R:
TCTGAGCTGGCATAGACACGT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]