GgaEX0004976 @ galGal4
Exon Skipping
Gene
ENSGALG00000003757 | POMT1
Description
protein O-mannosyl-transferase 1 [Source:RefSeq peptide;Acc:NP_001025856]
Coordinates
chr17:6227924-6230349:+
Coord C1 exon
chr17:6227924-6228019
Coord A exon
chr17:6229339-6229431
Coord C2 exon
chr17:6230253-6230349
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCATGTGTTACTGCACCAGGCA
3' ss Score
5.3
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
GTATGAGAATGGCCGAGGGAGTTCCCATCAGCAACAGGTGACCTGTTATCCCTTTAAGGATGTGAACAACTGGTGGATTGTCAAAGATCCTGGAAT
Seq A exon
GCAGCAGCTGGTGGTGAGTAACCCACCCCGTCCTGTCAGGCATGGGCACATTGTGCAGCTGGTCCACGGCATCACAACTCGGTACCTCAACAC
Seq C2 exon
GCATGATGTTGCTGCCCCTCTCAGCCCCCACTCCCAAGAAGTTTCCTGCTATATTGATTATAACATTTCCATGCCAGCACAGAACCTCTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.121 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=FE(17.6=100)
C2:
PF0281514=MIR=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCCCATCAGCAACAGG
R:
TCTCCAGAGGTTCTGTGCTGG
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]