MmuEX0036351 @ mm9
Exon Skipping
Gene
ENSMUSG00000039254 | Pomt1
Description
protein-O-mannosyltransferase 1 [Source:MGI Symbol;Acc:MGI:2138994]
Coordinates
chr2:32101535-32104231:+
Coord C1 exon
chr2:32101535-32101630
Coord A exon
chr2:32103057-32103149
Coord C2 exon
chr2:32104135-32104231
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGACAGCACTGTCTTCCTAGACA
3' ss Score
4.54
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATATGAGAATGGCCGTGGCAGCTCCCACCAGCAACAGGTGACCTGTTATCCCTTCAAAGACATCAATAACTGGTGGATCGTCAAGGATCCTGGGCG
Seq A exon
ACACCAGCTGGTGGTAAACAACCCTCCCCGGCCTGTAAGACATGGAGACATTGTACAGCTCGTTCACGGCATGACCACCCGCCTCCTTAACAC
Seq C2 exon
GCACGATGTCGCAGCCCCACTGAGCCCCCATTCTCAAGAAGTCTCCTGCTACATTGACTATAACATCTCCATGCCTGCCCAGAACCTCTGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039254_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(18.2=100)
A:
PF0281514=MIR=FE(17.6=100)
C2:
PF0281514=MIR=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAGAATGGCCGTGGCAG
R:
TGGGCAGGCATGGAGATGTTA
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: