BtaEX6047006 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005190 | TSC1
Description
TSC1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A6QQZ6]
Coordinates
chr11:102991990-102995633:-
Coord C1 exon
chr11:102995530-102995633
Coord A exon
chr11:102994278-102994430
Coord C2 exon
chr11:102991990-102992134
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTGTGCATGTTCAGCAC
3' ss Score
6.27
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
ACCGTGGTCCTATGCTTGTGAACACCCTGGTGGATTATTATCTGGAAACCAACTCTCAGCCTGTATTGCACATCCTGACTACCTTGCAAGAGCCCCATGATAAG
Seq A exon
CACCTCTTGGACAAAATGAATGAATACGTGGGCAAGGCCGCCTCTCGGTTATCCGCCCTCTTGCTACTGGGCCACGTCGTGAGGCTGCAGCCGTCATGGAAGCATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTCTACTAAAATGTCTCAAG
Seq C2 exon
ATGGACACCGACGTCATTGTCCTCACAACAGGAGTCTTAGTGTTGATAACCATGCTCCCAATGATTCCGCAGTCGGGGAAACAGCACCTTCATGATTTCTTTGATATCTTTGGCCGTCTTTCGTCATGGTGCCTGAAGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005190-'2-7,'2-3,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(26.2=100)
A:
PF043887=Hamartin=FE(38.5=100)
C2:
PF043887=Hamartin=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGTCCTATGCTTGTGA
R:
TCTTCAGGCACCATGACGAAA
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]