DreEX6083924 @ danRer10
Exon Skipping
Gene
ENSDARG00000057918 | tsc1b
Description
tuberous sclerosis 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3404]
Coordinates
chr21:17273297-17277267:+
Coord C1 exon
chr21:17273297-17273400
Coord A exon
chr21:17275637-17275789
Coord C2 exon
chr21:17277123-17277267
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGGTCTCTTTCTCAGCAC
3' ss Score
8.3
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATCGAGGGTCCGTGCTGCTGAATGGTTTGGTGGATTATTTCCTGGAGACCAACTCTGCCCAGACAGTGCACATCCTGTCTTCAGTGAGGGAGCCACATGATAAG
Seq A exon
CACCTTTTTGATAAAATGAATGAATGCATGGCTAAAGCCCCCTGTCGCCTGCCCACCCTCACTCTCCTGGGGCATGTTGTCCGTAAGCAGCCATCTTGGATCCACAAGATCGCGCACTATCCGCTGCTGCTATCTCTCCTCAAATGCCTCAAG
Seq C2 exon
ACAGACACAGATGTTGTGGTTCTGATAACTGGAGTCCTGGTGCTCATCACACTTTTACCCATGATTCCTCAAGCTGGCAAGCAACATCTCTATGAGTTTTTTGATATCTTTGGACGTCTGGCGTCTTGGAACCTAAGAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057918-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(4.5=100)
A:
PF043887=Hamartin=FE(6.6=100)
C2:
PF043887=Hamartin=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGTGCTGCTGAATGGTTT
R:
CTGGGTTTCTTAGGTTCCAAGACG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]