GgaEX6015286 @ galGal4
Exon Skipping
Gene
ENSGALG00000003500 | TSC1
Description
tuberous sclerosis 1 [Source:HGNC Symbol;Acc:HGNC:12362]
Coordinates
chr17:6738317-6740658:-
Coord C1 exon
chr17:6740555-6740658
Coord A exon
chr17:6739753-6739905
Coord C2 exon
chr17:6738317-6738461
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTCTGCAAATCTTCCACCAGCAC
3' ss Score
5.77
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACCGTGGACCTATGCTTGTGAACAGCCTGGTAGACTATTACTTGGAAACCAATTCTCAGCAGGCACTGCATATACTGTCCACGTTGCAGGAGCCTCATGACAAG
Seq A exon
CACCTTCTGGACAAAATTAATGAATATATGGGCAAAGCTGCTACTCGTTTACCCACTCTCTCGCTGCTGGGACATGTGATAAGGCGACAACCATCGTGGAAACATAAGCTTTCTCAAGCACCTCTCCTACTTTCATTACTTAAATGTCTCAAG
Seq C2 exon
ACTGACACAGATGTAGTAGTACTCACCACAGGTGTCCTAGTGCTAATAACCATGTTGCCAATGATTCCTCAGTCTGGCAAACAGTACCTCCATGATTTCTTTGGTATCTTTGGGCGTCTCTCAGCCTGGTGCTTGCAGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003500-'1-5,'1-2,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(13.8=100)
A:
PF043887=Hamartin=FE(10.9=100)
C2:
PF043887=Hamartin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGACCTATGCTTGTGA
R:
CTGGATTCTGCAAGCACCAGG
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]