BtaEX6047044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004194 | RALGDS
Description
Bos taurus ral guanine nucleotide dissociation stimulator (RALGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_001101978]
Coordinates
chr11:103132442-103134340:-
Coord C1 exon
chr11:103134237-103134340
Coord A exon
chr11:103133705-103133789
Coord C2 exon
chr11:103132442-103132510
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCCACTTTCTCTCCTCCAGGGA
3' ss Score
11.4
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GAGTGCCGGGTCCTCAAGAACTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTGCAGAGCAACTCCATCCACCGGCTGAAGAAGACGTGGGAAGAGGTCTCCAG
Seq A exon
GGACAGCCTCCGCGTCTTTCAGAAGCTGTCAGAGATTTTCTCGGACGAGAACAACTACTCCCTAAGCAGAGAGCTGCTCATCAAG
Seq C2 exon
GAGGGGACCTCCAAGTTTGCCACCCTGGAGATGAACCCCAAGCGAGCCCAGAGGCGCCCGAAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004194-'6-13,'6-12,7-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.435
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
PF0061714=RasGEF=FE(13.0=100)
C2:
PF0061714=RasGEF=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGGTCCTCAAGAACTTC
R:
CTCTTTCGGGCGCCTCTG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]