GgaEX0004460 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:7452466-7453625:-
Coord C1 exon
chr17:7453522-7453625
Coord A exon
chr17:7453126-7453210
Coord C2 exon
chr17:7452466-7452543
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCGTGTTCCCCCCGAGCAGGGA
3' ss Score
7.3
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGTGCCGCATCCTGAAGAACTTCTCCTCGCTCAGAGCCATCCTTTCAGCTCTGCAGTGCAATGCTGTGCACCGGCTGAAGAAGACCTGGGATGAGGTCCTGCG
Seq A exon
GGAGAGCTTCCGCACTTTCCATGAGCTCTCAGAGATCTTCTCCGATGAGAACAACCACTCCTTGAGCCGGGAGCTGCTCATTAAG
Seq C2 exon
GAGGGCACGTCCAAATTTGCCACCTTGGAGATCAACCCAAAGAGGGCCCAGAAGCGGCAGCAGCAGCAGCGAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.6=100)
A:
PF0061714=RasGEF=FE(12.8=100)
C2:
PF0061714=RasGEF=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGCATCCTGAAGAACTTC
R:
CATCTCTCGCTGCTGCTGC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]