MmuEX6099979 @ mm9
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28400935-28402740:+
Coord C1 exon
chr2:28400935-28401038
Coord A exon
chr2:28401381-28401465
Coord C2 exon
chr2:28402672-28402740
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCGCTCTGTGCCTCCTTCAGGGA
3' ss Score
9.6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTGCAGAGCGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCTCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACGTGGGAAGAGGTCTCCAG
Seq A exon
GGACAGCTTTCGAGTGTTCCAGAAACTGTCGGAGATCTTCTCTGATGAGAACAACTACTCCCTGAGCAGAGAGCTGCTCATCAAG
Seq C2 exon
GAAGGAACCTCCAAGTTTGCCACACTGGAGATGAACCCTAGGAGAGCCCAGAGGCGGCAGAAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'12-18,'12-17,13-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.478
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
PF0061714=RasGEF=FE(13.0=100)
C2:
PF0061714=RasGEF=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCGCTCAAGAATTTCT
R:
TCTCCTTCTGCCGCCTCTG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: