GgaEX0004460 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6792539-6793696:-
Coord C1 exon
chr17:6793593-6793696
Coord A exon
chr17:6793197-6793281
Coord C2 exon
chr17:6792539-6792616
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCCGTGTTCCCCCCGAGCAGGGA
3' ss Score
7.3
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAGTGCCGCATCCTGAAGAACTTCTCCTCGCTCAGAGCCATCCTTTCAGCTCTGCAGTGCAATGCTGTGCACCGGCTGAAGAAGACCTGGGATGAGGTCCTGCG
Seq A exon
GGAGAGCTTCCGCACTTTCCATGAGCTCTCAGAGATCTTCTCCGATGAGAACAACCACTCCTTGAGCCGGGAGCTGCTCATTAAG
Seq C2 exon
GAGGGCACGTCCAAATTTGCCACCTTGGAGATCAACCCAAAGAGGGCCCAGAAGCGGCAGCAGCAGCAGAGAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.6=100)
A:
PF0061714=RasGEF=FE(12.8=100)
C2:
PF0061714=RasGEF=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGCATCCTGAAGAACTTC
R:
CATCTCTCTCTGCTGCTGCTG
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]