MmuEX6099979 @ mm10
Exon Skipping
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28545415-28547220:+
Coord C1 exon
chr2:28545415-28545518
Coord A exon
chr2:28545861-28545945
Coord C2 exon
chr2:28547152-28547220
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCGCTCTGTGCCTCCTTCAGGGA
3' ss Score
9.6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGTGCAGAGCGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCTCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACGTGGGAAGAGGTCTCCAG
Seq A exon
GGACAGCTTTCGAGTGTTCCAGAAACTGTCGGAGATCTTCTCTGATGAGAACAACTACTCCCTGAGCAGAGAGCTGCTCATCAAG
Seq C2 exon
GAAGGAACCTCCAAGTTTGCCACACTGGAGATGAACCCTAGGAGAGCCCAGAGGCGGCAGAAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-'22-30,'22-29,23-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.478
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.8=100)
A:
PF0061714=RasGEF=FE(13.0=100)
C2:
PF0061714=RasGEF=FE(10.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGCGCTCAAGAATTTCT
R:
TCTCCTTCTGCCGCCTCTG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types