BtaEX6047157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103878180-103879033:-
Coord C1 exon
chr11:103878908-103879033
Coord A exon
chr11:103878499-103878540
Coord C2 exon
chr11:103878180-103878225
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCTATTCTGTGACCGCAGAGC
3' ss Score
7.33
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CGGAAACAGGTCCGCGAGCTGAGTGAGAAGGTGGACGAGCTCCAGCTGCAGCTGTTCCAGCGCGAGGGCCAGTTGCTGGCCGTGGAGGGCAAGCTCCGGCGGCGGCAGCTAGACGCGCTCATCCTG
Seq A exon
AGCTCTGATCTAGAGGACAGCTCACCCAGGAATTCCCAGGAG
Seq C2 exon
TTCTTGCTCCCTCAGGATCTGGAGGATACCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572-'11-13,'11-12,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.786 C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTGAGTGAGAAGGTGGA
R:
GCTGGGTATCCTCCAGATCCT
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]