HsaEX6063998 @ hg38
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136366800-136367976:-
Coord C1 exon
chr9:136367637-136367976
Coord A exon
chr9:136367216-136367257
Coord C2 exon
chr9:136366800-136366845
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTCTATGACCACAGAGC
3' ss Score
6.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGCACACAAATGGAGGGGCTGTGACCAGCCTCCGCGCCCAGCGGCTTGACGTCCTCCGGAGCCTCTGCTTGGAGTTGGGCGGCCGGGCCGAGGGCCCAGGGCAAGCTTGGGGCCCTCACTGAGGGTCGGCCTTGTGCTGTCCCGTCAGGCCATAGCCACGCGGGAGGAGCTGCACGCACAGCACGCCCGGGGCCTGCAGGAGAAGGACGCGCTGCGCAAGCAGGTGCGGGAGCTGGGCGAGAAGGCGGATGAGCTGCAGCTGCAGGTGTTCCAGTGTGAGGCGCAGCTACTGGCCGTGGAGGGCAGGCTCAGGCGGCAGCAGCTGGAGACGCTCGTCCTG
Seq A exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
Seq C2 exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.929 C2=0.906
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCGGATGAGCTG
R:
TTGTCTGAGAGCTGGGTGTCC
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains