HsaEX6063998 @ hg19
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]
Coordinates
chr9:139261252-139262428:-
Coord C1 exon
chr9:139262089-139262428
Coord A exon
chr9:139261668-139261709
Coord C2 exon
chr9:139261252-139261297
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTCTATGACCACAGAGC
3' ss Score
6.76
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGCACACAAATGGAGGGGCTGTGACCAGCCTCCGCGCCCAGCGGCTTGACGTCCTCCGGAGCCTCTGCTTGGAGTTGGGCGGCCGGGCCGAGGGCCCAGGGCAAGCTTGGGGCCCTCACTGAGGGTCGGCCTTGTGCTGTCCCGTCAGGCCATAGCCACGCGGGAGGAGCTGCACGCACAGCACGCCCGGGGCCTGCAGGAGAAGGACGCGCTGCGCAAGCAGGTGCGGGAGCTGGGCGAGAAGGCGGATGAGCTGCAGCTGCAGGTGTTCCAGTGTGAGGCGCAGCTACTGGCCGTGGAGGGCAGGCTCAGGCGGCAGCAGCTGGAGACGCTCGTCCTG
Seq A exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
Seq C2 exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.738 C2=0.792
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGGCGGATGAGCTG
R:
TTGTCTGAGAGCTGGGTGTCC
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)