MmuEX6099702 @ mm10
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26354357-26355524:-
Coord C1 exon
chr2:26355333-26355524
Coord A exon
chr2:26354830-26354871
Coord C2 exon
chr2:26354357-26354405
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTCTGTGGCCACAGAGC
3' ss Score
8.48
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTATGGCCTCCAGGGAAGAGCTGCATGCACAGTGTACCCAAAGCTTTCAGGACAAAGATAAGCTTCGAAAGCTGGTTCGAGAGCTGGGTGAGAAGGCAGATGAGCTGCAGCTACAGCTGTTCCAGACGGAGAGCCGATTACTGGCCGCCGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq A exon
AGCTCTGACTTGGAAGACAGTTCACCCAGGAACTCCCAGGAG
Seq C2 exon
CTCTCACTGCCTCAGGATCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-'13-24,'13-22,15-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.857 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000028294fB7028
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTGGTTCGAGAGCTGG
R:
CCAGATCCTGAGGCAGTGAGA
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types