RnoEX6015963 @ rn6
Exon Skipping
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3800507-3801662:-
Coord C1 exon
chr3:3801471-3801662
Coord A exon
chr3:3800966-3801007
Coord C2 exon
chr3:3800507-3800555
Length
42 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTCTGTGGCCACAGAGC
3' ss Score
8.48
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTATGACCTCAAGGGAAGAGCTGCATGCACAGTGTGCCCAAAGCTTTCAGGACAAAGATAAGCTGCGAAAGCAGGTTCGAGAACTGGATGAGAAGGCCGACGAGTTGCAGCTGCAGCTGTTCCAGACCGAGAGCCGATTACTGGCCGCTGAGGGCAGACTCAAGCAGCAGCAATTGGACATGCTCATCCTG
Seq A exon
AGCTCTGACTTGGAAGACAGTTCCCCCAGGAACTCCCAGGAG
Seq C2 exon
CTTTCACTGCCTCAGGACCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-'10-15,'10-13,11-15=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGAAGGCCGACGAGTTG
R:
CATCCTCCTCCAGGTCCTGAG
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]