BtaEX6047283 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000046 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:HGNC:11475]
Coordinates
chr11:104320753-104322186:+
Coord C1 exon
chr11:104320753-104320856
Coord A exon
chr11:104321663-104321851
Coord C2 exon
chr11:104322020-104322186
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTACCGGTCTGTCTCGCAGATG
3' ss Score
11.34
5' ss Seq
CGCGTAAGC
5' ss Score
5.72
Exon sequences
Seq C1 exon
GCACCAGCTGTTCTGCAAACTCACCCTGAGACACATCAACAAGTCCCCGGAGCACGTGCTGAGGCACACCCAGGGCCAGCGGTACCAGAGGGCGCTGCGGAAGT
Seq A exon
ATGAGGAGTGTCAGGAGCGGGGCGTGGAGTTCGTGCCGGCCTGCCTCCTGCACAAGAGGAGGAGGAGGGAAGACCAGCAGGACGGTGACGGGCCGCCACGTCCTAGAGAAGCCTTTTGGGAGCCCCCGTCCAGTGATGACGGCGCCGCCCCGAGCGACAGTGACGACAGCATGACAGACCTGTACCCGC
Seq C2 exon
CAGAGCTGTTCGCCAAGAAGGACCCAGAAGCGACTGGGCCTGGGGATAGTACTGACGACTTTCTGACCGAGGACGAGGATGAGAAGCCGAGGTGCCCCCGAGAGCCGGGCCCTGAAGACAGCAGGGCCCTGGAAGCGGGCCAGGAGCGCGTCCTCAAGCGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000046-'3-4,'3-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.703 C2=1.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.7=100)
A:
PF054776=SURF2=FE(24.6=100)
C2:
PF054776=SURF2=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACATCAACAAGTCCCCGG
R:
CTTCCTGCGCTTGAGGACG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]