GgaEX1056539 @ galGal4
Exon Skipping
Gene
ENSGALG00000003181 | SURF2
Description
surfeit locus protein 2 [Source:RefSeq peptide;Acc:NP_001039294]
Coordinates
chr17:6873898-6875391:+
Coord C1 exon
chr17:6873898-6874001
Coord A exon
chr17:6874426-6874629
Coord C2 exon
chr17:6875222-6875391
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCAATCCCTTGCACCATTAGATG
3' ss Score
5.48
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ACATCAGCTGTTCTGCAAACTCACTCTCAGACACATCAACAAGCTTCCAGAGCATGTCCTGCGTCACGTCCAAGGGAAACGCTATCAGAAGGCACTGAAAACAT
Seq A exon
ATGAGAAGTGCCAGAAGGAAGGGGTGAAGTATGTCCCTGCCTGCCTGCGGCAGAAGCAGCAGCGGAGACAGCACGCTGACGACCAAATGGATGGGAGCAGGCAGCCCCACAGAACAGAAGAATTCTGGGAGCCAAACTCTCCCAGGACAGATGAGGATGAGGATGGAGAGGAGACGGACGACAGCATGAGCGATCTGTACCCAC
Seq C2 exon
CTGGACTCTTCCCAGAAAAAAGCCCAGCAGCTCCCCAAAACACAGAGGCCAACGATGGTTTTGCAACAGACAGCGAGGACGATGGGGCCAAGCTGAGTAGGGAGAACAGCGACGTGAACGGAGATGGTGGAAGAATGGAAGTGAGCAGAGCAGCTGGCAAGAGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003181-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.797 C2=1.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.4=100)
A:
PF054776=SURF2=FE(26.1=100)
C2:
PF054776=SURF2=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGTTCTGCAAACTCACT
R:
CTTTCCCCTCTTGCCAGCTG
Band lengths:
271-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]