HsaEX0062969 @ hg19
Exon Skipping
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:11475]
Coordinates
chr9:136224587-136227310:+
Coord C1 exon
chr9:136224587-136224690
Coord A exon
chr9:136226826-136227005
Coord C2 exon
chr9:136227141-136227310
Length
180 bp
Sequences
Splice sites
3' ss Seq
CGTGCTGGCTTATCTCCCAGATG
3' ss Score
9.15
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCACCAGTTGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGCGGTACCAGCGAGCTCTGTGTAAAT
Seq A exon
ATGAAGAATGTCAGAAGCAAGGGGTGGAGTACGTGCCTGCCTGCCTGGTGCACCGGAGGAGGAGGAGGGAGGACCAGATGGACGGTGACGGGCCTCGCCCGCGGGAAGCCTTCTGGGAGCCCACATCCAGTGATGAGGGGGGAGCTGCAAGTGATGACAGCATGACAGACCTGTACCCAC
Seq C2 exon
CTGAGCTATTCACCAGAAAGGACCTTGGAAGCACGGAGGATGGGGATGGCACTGATGACTTTTTGACAGACAAAGAGGATGAGAAGGCAAAGCCCCCAAGAGAGAAGGCCACTGATGAGAGCAGGAGAGAGACGACCGTGTACCGAGGGCTGGTCCAGAAGCGCGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.656 C2=0.982
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.8=100)
A:
PF054776=SURF2=FE(23.7=100)
C2:
PF054776=SURF2=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGCAAACTCACCCTGC
R:
CTCGGTACACGGTCGTCTCTC
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)