MmuEX6099780 @ mm10
Exon Skipping
Gene
ENSMUSG00000014873 | Surf2
Description
surfeit gene 2 [Source:MGI Symbol;Acc:MGI:98444]
Coordinates
chr2:26917428-26919358:+
Coord C1 exon
chr2:26917428-26917531
Coord A exon
chr2:26918873-26919055
Coord C2 exon
chr2:26919192-26919358
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGAGCTTGCTAGTCTCCTAGATG
3' ss Score
0.1
5' ss Seq
CACGTAAGC
5' ss Score
6.58
Exon sequences
Seq C1 exon
GCACCAACTGTTCTGCAAACTCACCCTGAGGCACATCAATAAGTCCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGAGGTATCAGAGAGCACTTCATCAAT
Seq A exon
ATGAAGAGTGTCAGAAACAAGGTGTGGAATATGTCCCTGCCTGCCTTCTACACAAGAGGAAGAAGAGAGAGGACCAGACGAACAGTGATGAACTCCCAGGCCAGAGAACAGGTTTCTGGGAGCCAGCTTCCAGTGACGAGGAAGACGCCTTGAGTGACGACAGCATGACAGACCTATACCCAC
Seq C2 exon
CTGAGCTGTTCACAAAGAGAGAACTAGGCAAGCCTAAGAACGATGACACTCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGCTTTAGAGAGAGGGAAGAGGCCAGAGTGGGCCACAAGAGGGGTCGTAAACTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014873-'5-14,'5-9,6-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.677 C2=1.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(13.8=100)
A:
PF054776=SURF2=FE(24.1=100)
C2:
PF054776=SURF2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCCTGAGGCACATCAAT
R:
GTTTACGACCCCTCTTGTGGC
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types