DreEX0076571 @ danRer10
Exon Skipping
Gene
ENSDARG00000037182 | surf2
Description
surfeit 2 [Source:ZFIN;Acc:ZDB-GENE-040801-86]
Coordinates
chr5:1153310-1162183:-
Coord C1 exon
chr5:1162032-1162183
Coord A exon
chr5:1157438-1157644
Coord C2 exon
chr5:1153310-1153500
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTTAGATG
3' ss Score
9.11
5' ss Seq
CACGTCAGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
ATTAAGTGTGTGCTGAATGGACACGAGTTTCCCTGTAGTCTCTCTGAACTTCAACACTTCACGTCCGGCAAGAAATATAAGAAGCTCAGCGCACAGGAGCAGTTTAACTACAGCCAGTACGAGCCGCACATAACCAGCAGCAGTAAACAACC
Seq A exon
ATGAGGAGTGTGTGCGTCAGGGTGTGAAGTTTGTGCCTGTGCAGCTCAGGAAGAAGCAGAGACGCACAGAGAGCGATGAGGACACAGACAGACAAGTACAGAAGAAGACGAAGAAGAAGCGGACGGAGGACAGCGGTGTGTGGGCTCCCAGCAGCAGTGAAGAAGACAACAGCGACTCTGAGGACAGCATGTCTGATCTCTATCCAC
Seq C2 exon
CATCAATGTTCAGACTGAAGAACGCAGATGATGAGCAGGAGATGAAAGATGAGGATGAGGATTTTCAGACTGATGAAGATGAAGAGGAAATGGAAGTAGAAAACCAGGAGCAGAAACGCAGGAAGGTTGGAGAATCACATTTATTTTATTTATAAATCTGTAATGTGTTATAATTGGCATGTAAATGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037182_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.800 C2=0.922
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(22.0=100)
A:
PF054776=SURF2=FE(30.4=100)
C2:
PF054776=SURF2=PD(20.7=90.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAGTGTGTGCTGAATGGACA
R:
ATGTGATTCTCCAACCTTCCTGC
Band lengths:
292-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]