BtaEX6047294 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104351500-104353021:+
Coord C1 exon
chr11:104351500-104351660
Coord A exon
chr11:104352145-104352275
Coord C2 exon
chr11:104352938-104353021
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGCTCTCTGCCCCTCCCCAGGGA
3' ss Score
9.02
5' ss Seq
TCGGTGACC
5' ss Score
2.74
Exon sequences
Seq C1 exon
ACGCTGGAAGCCATGCACCTGCGCAAGTCCATTCGGAGCTCCCCCGCCAGCCTGAGCGGCGTCCTGCGGACCATGGAGGAGAAGGTCCCCGACGCGAAAACCTTCCAGGCCCTCTTGCCTCTGATGCTCCAGGCCGACCCCGCGGAGCGAGTCACCGTCAG
Seq A exon
GGACGTGATTCACTTCACCTTCGTGCGCAGCAACTTCCGGTCCTCCAGCCTCGCCCTGGTTCTGCGCCGGCAGGTGGTGCCCGAGTTCATCATTGACATGCTGCTCGAGAGCAACGTGGCCAGCATCTTCG
Seq C2 exon
AGGTCATGCAGAACTTCTCCAGCCGCCCTGAAGTCCAGCACAGGGCCCTGAAGAGGCTCCTGAGGATGCCTGAAGACCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'10-11,'10-8,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.7=100)
A:
PF0006920=Pkinase=PD(3.0=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGCCATGCACCTG
R:
CAGCTGGTCTTCAGGCATCCT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]