RnoEX0087042 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5493490-5495068:+
Coord C1 exon
chr3:5493490-5493653
Coord A exon
chr3:5494351-5494481
Coord C2 exon
chr3:5494985-5495068
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTGCCCCTTTGCCAGGGA
3' ss Score
6.57
5' ss Seq
TAGGTGATG
5' ss Score
3.49
Exon sequences
Seq C1 exon
GACGCAGAAGCCATGCACCTGCGGAAGTCCATTCGCCACCATCCAGGCAGCCTGAAGCCCATCCTGAAAACCATGGAGGAGAAGGAAATCCCTGGTACAGATGTCTACTATTTGCTTCTGCCCTTTATGCTGCATATCAACCCCTCTGATCGACTATCAATCAA
Seq A exon
GGATGTGATTCACGTCACCGTCATGAGCAACTCCTACATGACCTCCTGTGTTGCTCTGAACATGCAGCGGCAGGTGGTGCCCATCTTCATCACTGACGTACTGCTAGAGGGCAACATGGCCAACATCTTAG
Seq C2 exon
ATGTCATGCAGAATTTCTCCCATCGACCAGAGGTCCAACTCAGAGCCCTTAACAAGCTTCTGACAATGCCAGAGGATCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.9=100)
A:
PF0006920=Pkinase=PD(3.0=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCAGAAGCCATGCACC
R:
GCTGATCCTCTGGCATTGTCA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]