GgaEX1056130 @ galGal4
Exon Skipping
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6893835-6895354:+
Coord C1 exon
chr17:6893835-6893995
Coord A exon
chr17:6894501-6894631
Coord C2 exon
chr17:6895271-6895354
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCCTAACTCTAGGGA
3' ss Score
10.9
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCAGAAGAAATCACTTTGTTACTGCAGGATATAAGACGAGACACCAGCCATCTTGATAGAGTTCTGTCCCTAATGGAAATTGGAGAAAACAGTTCTTTGCCTTTATTCCCAGTTTTATCTATGATGCTACAGATTCAGCCCAGCATGAGAACCACAGCAAA
Seq A exon
GGATCTGATCGATGTGCCATTTATTGGGGAATGTCTGATTGTTGCTAGTTCATCTGTAATAAAACAGAAGAAGTCTTTGGCTTCCTGTGTAATAGATATGTTCCTTGAGGGAGGAATCGGAAGCATTCTAG
Seq C2 exon
AATTCATGCAAGCTTTCTGGGATGTAGAAGAAGCACAGGCTAAAGCCATGCAACACCTGGCCCACTTTGTAGGAGATAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.4=100)
A:
PF0006920=Pkinase=PD(2.9=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAAATCACTTTGTTACTGCA
R:
TTTTATCTCCTACAAAGTGGGCCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]