MmuEX6099789 @ mm9
Exon Skipping
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26801284-26802847:+
Coord C1 exon
chr2:26801284-26801447
Coord A exon
chr2:26802117-26802247
Coord C2 exon
chr2:26802764-26802847
Length
131 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTGCCCCTTTGCCAGGGA
3' ss Score
6.51
5' ss Seq
TAGGTGATG
5' ss Score
3.49
Exon sequences
Seq C1 exon
GACACAGAAGCCATGCAACTGCGGAAGGCCATCCGCCATCATCCAGGCAGCCTGAAGCCCATCCTGAAAACCATGGAGGAGAAGCAAATCCCTGGTACAGATGTCTACTATTTGCTTCTGCCCTTCATGTTGCATATCAACCCCTCCGATCGACTGGCAATCAA
Seq A exon
GGATGTGATGCAAGTCACCTTCATGAGCAACTCCTTCAAAAGCTCCTCTGTTGCGCTGAATATGCAGCGGCAGAAGGTCCCCATCTTCATCACTGACGTGCTGCTTGAAGGCAACATGGCCAACATCTTAG
Seq C2 exon
ATGTCATGCAGAATTTCTCCAGTCGACCAGAGGTCCAGCTCAGAGCCATTAACAAGTTGTTGACAATGCCAGAGGACCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'9-12,'9-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(20.3=100)
A:
PF0006920=Pkinase=PD(3.0=17.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGAAGCCATGCAACTG
R:
TAGCTGGTCCTCTGGCATTGT
Band lengths:
247-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: