BtaEX6047372 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004510 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr11:104599783-104607031:-
Coord C1 exon
chr11:104606918-104607031
Coord A exon
chr11:104601248-104601386
Coord C2 exon
chr11:104599783-104599896
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCAACTCTGGAACTTTTCAGATC
3' ss Score
5.59
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTGCTCCCCTACGACTACTGCGGGGCGTACGGGCATCGGGCCCGCGAGGACTACGCCTACGGCCGGCTGCTGGGCCAGGAGTACACCTTCAGCTTCCCTCCGCACCACGATGTG
Seq A exon
ATCAAGAAGGAGTGTCTGGCCTGCAGGGGGGCCGCGGCCGTGTTCGACATGTCCTACTTCGGGAAGTTCTTCCTGGTGGGCCCAGACGCCAGGAAGGCTGCCGACTGGCTCTTCTCCGCCGACGTCAGCCGGCCCCCAG
Seq C2 exon
GCTCCACAGTGTACACGTGCATGCTGAACCACCGCGGGGGCACAGAGAGCGACCTGACCGTGAGCCGCCTGGCCCCTGGCCCCCAGGCCTCCCCGCTGGCCCCCGCCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004510-'19-26,'19-23,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=PU(14.4=70.2)
C2:
PF0157116=GCV_T=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCCTACGACTACTGC
R:
TTCAAAGGCGGGGGCCAG
Band lengths:
226-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]