GgaEX0003647 @ galGal3
Exon Skipping
Gene
ENSGALG00000002855 | F1NBJ7_CHICK
Description
NA
Coordinates
chr17:7708923-7710083:-
Coord C1 exon
chr17:7709970-7710083
Coord A exon
chr17:7709279-7709417
Coord C2 exon
chr17:7708923-7709036
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGCTTTAATTTTAGATC
3' ss Score
9.65
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTCCTGGATTACGACTATTACGGTGCTTACAGCCAGGAGCAGCACAGGGACTACACCTACAACCAGCTGCTGGCAGATGAGTACACCTTCGACTTTCCACCACATCACAACATT
Seq A exon
ATCAAGAAGGAATGCCTGACGTGCAGAAATGCCGTGGCTCTCTTCAACATGTCTTATTTTGGGAAGTTCTACCTGGTTGGCCCCGAAGCCACCAAAGCAGCCAACTGGCTGTTCAGTGCTGACGTGAGCAAAGCTCCAG
Seq C2 exon
GCAGCACCGTGTACACCTGCATGCTGAACAAGCGTGGCGGGGTGGAGAGCGACCTGACTGTCAGCAGGATCAGCCCCGGTGACCCCAGCTCTCCACTGGCCCCCGCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
62%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=PU(14.4=70.2)
C2:
PF0157116=GCV_T=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATTACGACTATTACGGTGC
R:
CAGTGGAGAGCTGGGGTCA
Band lengths:
210-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]