MmuEX0040991 @ mm10
Exon Skipping
Gene
ENSMUSG00000009614 | Sardh
Description
sarcosine dehydrogenase [Source:MGI Symbol;Acc:MGI:2183102]
Coordinates
chr2:27218798-27225082:-
Coord C1 exon
chr2:27224969-27225082
Coord A exon
chr2:27220643-27220781
Coord C2 exon
chr2:27218798-27218911
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTCCACTGGGCCTTCCAGATC
3' ss Score
6.59
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTCCTTGACTACGACTACTACGGGGCCTACGGAAACCAGGCACACAAGGACTACACCTACAGCAGGTTGCTAGGCGATGAGTACACCTTCGACTTCCCACCCCACCACCACATG
Seq A exon
ATCCAGAAGGAATGTCTGGCCTGCAGAGGGGCTGCTGCTGTGTTCAACATGTCTTACTTTGGGAAGTTCTACCTGCTCGGGGTGGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAG
Seq C2 exon
GCTCAACAGTGTACACATGCATGCTGAACCAACGGGGAGGCACTGAGAGCGACCTGACTGTTAGCCGATTGGCTCCTGGCACCCAGGCCAGTCCCCTGGTCCCTGCCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009614-'31-30,'31-28,33-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=PU(14.4=70.2)
C2:
PF0157116=GCV_T=FE(16.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGACTACGACTACTACGGG
R:
CTTCAAAGGCAGGGACCAGG
Band lengths:
227-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types