RnoEX0078023 @ rn6
Exon Skipping
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5769784-5775831:-
Coord C1 exon
chr3:5775718-5775831
Coord A exon
chr3:5771577-5771715
Coord C2 exon
chr3:5769784-5769897
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTCCATGGGGCCTTTTAGATC
3' ss Score
5.53
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTCCTAGACTACGACTACTATGGGGCCTACGGACACCAGGCACACAAGGACTACGCCTACAGCAGGCTGCTGGGCGATGAATATACCTTCGACTTCCCACCCCACCACTGCGTG
Seq A exon
ATCCAGAAGGAATGTCTGGCCTGCAGAACGGCTGCCGCCGTGTTCAACATGTCTTACTTCGGGAAGTTCTACCTTCTGGGGGCAGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAG
Seq C2 exon
GCTCCACGGTGTACACATGCATGCTGAACCAACGGGGAGGCACCGAGAGCGACCTGACTGTTAGCTGCCTGGCCCCTGGTGCCCAGGCCAGTCCCCTGGCCCCTGCCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0157116=GCV_T=PU(14.4=70.2)
C2:
PF0157116=GCV_T=FE(16.6=100)
Main Skipping Isoform:
ENSRNOT00000009555fB12880
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAGACTACGACTACTATGGGG
R:
GCCAGGCAGCTAACAGTCAG
Band lengths:
187-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]