BtaEX6047393 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104650713-104653010:-
Coord C1 exon
chr11:104652923-104653010
Coord A exon
chr11:104651635-104651758
Coord C2 exon
chr11:104650713-104650799
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTGCCACGTGCATCCTGCAGGAG
3' ss Score
7.01
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GTTCAACGACGAGGTGAAGCACATTAAGGTGGTGGAGAAGGACAGCTGGGTCCACATCACAGAAGCCAAGAAATTTGAGAGCCTCTTG
Seq A exon
GAGCTGGTGGAGTACTACCAGTACCACTCGCTCAAGGAGAGCTTCAAGCAGCTGGACACCACACTCAAGTACCCGTACAAGGCCTGGGAACGCACAGCCTCCAGGGCCTCCAGCCGCTCCCCAG
Seq C2 exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCGGCCTTGCTTCTCAGGGCTCCTCCACACCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-'29-28,'29-26,30-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(6.7=11.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGACGAGGTGAAGCACAT
R:
AGAAGGGTGTGGAGGAGCC
Band lengths:
166-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]