RnoEX6016103 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5816759-5818663:-
Coord C1 exon
chr3:5818576-5818663
Coord A exon
chr3:5817458-5817581
Coord C2 exon
chr3:5816759-5816845
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGAGTGTACGCCCCCTGCAGGAG
3' ss Score
6.44
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTCAATGATGAAGTGAAACACATCAAGGTGGTGGAAAAAGACAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTG
Seq A exon
GAGCTGGTGGAGTACTACCAGTGCCACTCACTTAAGGAGAGCTTCAAGCAGTTAGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGCGCCGCCACCAGGGCCTCAAGCCGATCTCCAG
Seq C2 exon
CTTCGTGTGCTTCCTACAGCTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGGCCCCTCTGCTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'38-42,'38-38,40-42=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(6.7=11.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGAAGTGAAACACATCAAGGTG
R:
CTGACCAGAAGGGAGCAGAGG
Band lengths:
170-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]