GgaEX7009835 @ galGal4
Exon Skipping
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7051179-7054136:-
Coord C1 exon
chr17:7054049-7054136
Coord A exon
chr17:7053837-7053960
Coord C2 exon
chr17:7051179-7051333
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCCGTGCTTTGCAGGAG
3' ss Score
10.69
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCAACGAAGAAGTGAAGCACATCAAGGTGGTGGAGAAGGACAACTGGATCCACATCACGGAAGCCAAGAAGTTTGAAAGCTTGTTG
Seq A exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
Seq C2 exon
TGTTCACCCCACGGGTCATAGGGACAGCAGTGGCACGCTACAACTTTGCAGCGCGGGACATGCGGGAGCTGTCGCTGCGGGAGGGCGACGTGGTGAAGATCTACAGCAGGATTGGCGGTGACCAGGGCTGGTGGAAGGGGGAAACCAACGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-'48-52,'48-45,49-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(6.7=11.9)
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACGAAGAAGTGAAGCACA
R:
CTCCCGTTGGTTTCCCCCTTC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]