MmuEX6099879 @ mm9
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27123671-27125735:-
Coord C1 exon
chr2:27125648-27125735
Coord A exon
chr2:27124419-27124542
Coord C2 exon
chr2:27123671-27123757
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGAGTGTGCAACCCCTGCAGGAG
3' ss Score
6.58
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTG
Seq A exon
GAGCTGGTGGAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGAACCACCAGCAGGGCCTCAAGCCGGTCTCCAG
Seq C2 exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-'32-36,'32-35,36-36=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
PF0001719=SH2=PD(6.7=11.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGAGGTGAAACATATCAAGGTG
R:
CTGACCAGAAGGGAGCAGAAG
Band lengths:
170-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: