BtaEX6047397 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104868475-104872859:-
Coord C1 exon
chr11:104872731-104872859
Coord A exon
chr11:104869521-104869712
Coord C2 exon
chr11:104868475-104868698
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTGCTCTCCCGCAGGAC
3' ss Score
11.85
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGAAGATGGACAGCCGCGAGTACCCGGACGCGCAGGGCTTCGCAGCCGACATCCGGTTGATGTTCTCCAACTGTTATAAATACAATCCCCCGGACCACGAGGTGGTAGCCATGGCCAGGAAGCTGCAG
Seq A exon
GACGTGTTTGAGATGCGTTTCGCCAAGATGCCAGACGAGCCAGCAGAGGCACCCGCCCTGCCCGCGCCTGCAGCCCCCGTGGTCAGCAAGGGCGTGGAGAGCAGCCGCAGCAGCGACGAGAGCTCGTCGGACTCAGGCAGCTCGGACTCGGAGGAGGAGCGTGCCACGCGGCTGGCGGAGCTGCAGGAGCAG
Seq C2 exon
CTGAAGGCTGTGCACGAGCAGCTGGCGGCTCTGTCTCAGGCGCCGGTGAACAAGCCAAAGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGGACAAGGACAAGGAGCGGCACAAGGCCAAGGCCGAGGAGGAGAAGCGGGCCAAGGCCGCCACGCCCGCCAAGCAGGCCCCGCAGAAGAAGGCGCCCGCCAAGAAGGCCAACAGCACCAGCGCGGCCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-'7-13,'7-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.922 C2=1.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
PF112443=Med25_NR-box=PU(50.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGGACAGCCGCGAGTA
R:
CTTGTGCCGCTCCTTGTCC
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]