DreEX6083970 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18234026-18234895:-
Coord C1 exon
chr21:18234767-18234895
Coord A exon
chr21:18234454-18234660
Coord C2 exon
chr21:18234026-18234094
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGTTATTCTTTCCAGGAT
3' ss Score
9.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAAAAAATGGATAGTCGAGAGTACCAGGATGCTCAGACTTTTGCTGCAGATGTGCGATTAATGTTCTCAAATTGTTACAAGTACAACCCACCTGATCATGAGGTGGTTGCTATGGCCAGAAAACTGCAG
Seq A exon
GATGTGTTTGAAATGCGATTTGCAAAGATGCCTGATGAGCCAGTGGAGGTTCCTGGGGCAGGTGGTGTAGGTGGGGCCGGTGTGGTCAGTAAGAGTACTGTCAGCAGTGAGAGCAGTGGCGACTCCTCCACCTCTGACAGCTCCGACTCTGAGGAGGAGAGGGCCACCCGGCTTGCCGAGCTGCAGGAACAGGTGGGTGCGGAACAG
Seq C2 exon
TGTATCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-'13-13,'13-10,15-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.768 C2=0.870
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATGGATAGTCGAGAGTACCAGG
R:
CTGATTATTCTTGGTGCACCCGT
Band lengths:
196-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]