GgaEX1011191 @ galGal3
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
NA
Coordinates
chr17:7845708-7847602:-
Coord C1 exon
chr17:7847474-7847602
Coord A exon
chr17:7846773-7846964
Coord C2 exon
chr17:7845708-7845943
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCCTTTCTTGTAGGAT
3' ss Score
11.76
5' ss Seq
CAGGTTACT
5' ss Score
0.49
Exon sequences
Seq C1 exon
AAAAAGATGGACAGTCGGGAATACCAGGACGCACAAGGTTTTGCAGCAGATATTCGGTTAATGTTCTCTAATTGTTACAAGTACAATCCTCCAGACCACGAAGTGGTAGCCATGGCCAGGAAGCTACAG
Seq A exon
GATGTCTTTGAGATGAGGTTTGCAAAGATGCCTGATGAGCCTGCAGAGGCCCCTCCTCCTCCTCCTCCAACAGCACCAGTTGTGAGCAAAAGCACAGAGAGCAGTCACAGCAGTGAGGAGAGCTCTTCTGACTCAGACAGCTCAGACTCGGAAGAAGAGCGAGCAACTCGGCTGGCAGAGCTCCAGGAGCAG
Seq C2 exon
CTAAAGGCAGTCCATGAGCAGCTAGCTGCGTTATCACAAGCACCAGTGAACAAACCAAAGAAAAAAAAAGAGAAGAAGGAAAAAGAGAAGAAAAAGAAAGACAAAGAGAAGGAAAAGGAAAAGCACAAAGTAAAAGCTGAGGAGGAGAAGAAGCCTAAGGTGGCTCAACCACCGAAGCAAACCCAGCAGAAGAAAGCCCCAGCTAAAAAGGCAAACAGCACGACCACAGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.953 C2=1.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
PF087385=Gon7=PU(50.6=70.3)
C2:
PF087385=Gon7=PD(47.2=53.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAGGTTTTGCAGCAGAT
R:
GGCTTCTTCTCCTCCTCAGCT
Band lengths:
254-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]