MmuEX6099885 @ mm9
Exon Skipping
Gene
ENSMUSG00000026918 | Brd3
Description
bromodomain containing 3 [Source:MGI Symbol;Acc:MGI:1914632]
Coordinates
chr2:27308920-27312557:-
Coord C1 exon
chr2:27312429-27312557
Coord A exon
chr2:27309833-27310024
Coord C2 exon
chr2:27308920-27308970
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCTCTTTTTCCCCAGGAT
3' ss Score
11.74
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGAAGATGGATAGCCGAGAGTACCCAGATGCACAGGGCTTTGCTGCTGATATCCGGTTAATGTTCTCGAATTGTTATAAGTACAACCCTCCAGACCACGAAGTGGTGGCCATGGCCAGGAAGCTCCAG
Seq A exon
GATGTGTTTGAGATGAGGTTTGCCAAGATGCCCGATGAGCCCATGGAGGCGCCTGCGCTGCCCGCTCCCACGGCCCCCATCGTGAGCAAGGGGGCTGAGAGCAGCCGCAGTAGTGAGGAGAGCTCTTCAGATTCAGGCAGCTCAGACTCAGAAGAGGAGCGAGCCACTCGGCTGGCTGAGCTGCAGGAGCAG
Seq C2 exon
ACTGGCTGCGGAGCCTTCCAGGATCAGCTGTTGAATGTCTCCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026918-'18-20,'18-19,19-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.883 C2=0.706
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGATGGATAGCCGAGAGT
R:
TGCACAGAGGAGACATTCAACA
Band lengths:
179-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: