RnoEX0015109 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6002537-6006804:-
Coord C1 exon
chr3:6006676-6006804
Coord A exon
chr3:6004041-6004232
Coord C2 exon
chr3:6002537-6002772
Length
192 bp
Sequences
Splice sites
3' ss Seq
GATGTCCCTTTTCCCCCCAGGAT
3' ss Score
11.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGAAAATGGACAGCCGTGAGTACCCAGATGCACAGGGCTTCGCTGCCGATATCCGGTTAATGTTCTCCAATTGTTATAAGTACAACCCTCCAGACCACGAAGTGGTAGCCATGGCCAGGAAGCTCCAG
Seq A exon
GATGTGTTTGAGATGAGGTTTGCCAAGATGCCCGATGAGCCCATGGAGGTGCCTGCGCTGCCTGCTCCCACAGCCCCCATCGTGAGCAAAGGGGCTGAGAGCAGCCGTAGTAGCGAGGAGAGCTCTTCGGACTCAGGCAGCTCAGACTCTGAAGAGGAGCGAGCCACTCGGCTGGCAGAGCTGCAGGAGCAG
Seq C2 exon
CTGAAAGCCGTGCACGAACAGCTGGCCGCCTTGTCTCAGGCCCCAGTGAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAAAAGGAGAAGAAGAAGAAAGACAAGGAGAAGGAGAAGGAGAAGCACAAGGCCAAGTCCGAGGAGGAGAAGAAGGCCAAGGCAGCCCCAGCAGCCAAGCAGGCCCAGCAGAAGAAGGCTCCCACCAAGAAGGCCAATAGCACAACCACAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-'27-17,'27-13,30-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.833 C2=1.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(44.9=93.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGTACCCAGATGCACAG
R:
GCCTTGTGCTTCTCCTTCTCC
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]