BtaEX6047398 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010582 | BRD3
Description
Bos taurus bromodomain containing 3 (BRD3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076873]
Coordinates
chr11:104863856-104869712:-
Coord C1 exon
chr11:104869521-104869712
Coord A exon
chr11:104868475-104868698
Coord C2 exon
chr11:104863856-104864148
Length
224 bp
Sequences
Splice sites
3' ss Seq
CCGGCGGCCGTGTCTTCCAGCTG
3' ss Score
7.68
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACGTGTTTGAGATGCGTTTCGCCAAGATGCCAGACGAGCCAGCAGAGGCACCCGCCCTGCCCGCGCCTGCAGCCCCCGTGGTCAGCAAGGGCGTGGAGAGCAGCCGCAGCAGCGACGAGAGCTCGTCGGACTCAGGCAGCTCGGACTCGGAGGAGGAGCGTGCCACGCGGCTGGCGGAGCTGCAGGAGCAG
Seq A exon
CTGAAGGCTGTGCACGAGCAGCTGGCGGCTCTGTCTCAGGCGCCGGTGAACAAGCCAAAGAGGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAGGACAAGGACAAGGAGCGGCACAAGGCCAAGGCCGAGGAGGAGAAGCGGGCCAAGGCCGCCACGCCCGCCAAGCAGGCCCCGCAGAAGAAGGCGCCCGCCAAGAAGGCCAACAGCACCAGCGCGGCCGGCAG
Seq C2 exon
ACAGCCGAAGAAGGGCGGCAAGCAGGCATCGGCCTCCTACGACTCGGAGGAAGAGGAGGAGGGGCTGCCCATGAGCTATGATGAGAAGCGGCAGCTGAGCCTGGACATCAACCGGCTCCCTGGGGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCGCGGGAGCCCTCGCTGCGGGACTCCAACCCCGACGAGATCGAGATCGACTTCGAGACCCTGAAGCCCACCACGCTGCGGGAGCTGGAGAGATACGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAGCCGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010582-'9-16,'9-13,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=1.000 C2=0.929
Domain overlap (PFAM):
C1:
NO
A:
PF112443=Med25_NR-box=PU(50.0=40.0)
C2:
PF112443=Med25_NR-box=PD(48.3=29.3),PF084185=Pol_alpha_B_N=PU(31.4=37.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTTTGAGATGCGTTTCG
R:
GTTGATGTCCAGGCTCAGCTG
Band lengths:
303-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]