GgaEX6015360 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7162595-7164666:-
Coord C1 exon
chr17:7164475-7164666
Coord A exon
chr17:7163410-7163645
Coord C2 exon
chr17:7162595-7162887
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTTTCACAATTCTCTTCCAGCTA
3' ss Score
8.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GATGTCTTTGAGATGAGGTTTGCAAAGATGCCTGATGAGCCTGCAGAGGCCCCTCCTCCTCCTCCTCCAACAGCACCAGTTGTGAGCAAAAGCACAGAGAGCAGTCACAGCAGTGAGGAGAGCTCTTCTGACTCAGACAGCTCAGACTCGGAAGAAGAGCGAGCAACTCGGCTGGCAGAGCTCCAGGAGCAG
Seq A exon
CTAAAGGCAGTCCATGAGCAGCTAGCTGCGTTATCACAAGCACCAGTGAACAAACCAAAGAAAAAAAAAGAGAAGAAGGAAAAAGAGAAGAAAAAGAAAGACAAAGAGAAGGAAAAGGAAAAGCACAAAGTAAAAGCTGAGGAGGAGAAGAAGCCTAAGGTGGCTCAACCACCGAAGCAAACCCAGCAGAAGAAAGCCCCAGCTAAAAAGGCAAACAGCACGACCACAGCTAGCAG
Seq C2 exon
GCAGCCCAAGAAAGGAGGAAAACAGGCATCTGCAACCTATGATTCGGATGAGGAGGAGGAAGGCCTGCCCATGACCTATGATGAGAAACGGCAGCTCAGCTTGGACATCAACCGCTTGCCTGGGGAGAAGCTGGGCCGAGTGGTGCACATCATCCAGTCACGGGAACCTTCCCTCAGGGACTCCAATCCTGATGAGATAGAAATAGATTTTGAAACCTTGAAGCCCACAACGTTGCGAGAACTGGAGAGATACGTGAAATCTTGTTTACAGAAAAAGCAAAGGAAACCATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682-'18-17,'18-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=1.000 C2=0.949
Domain overlap (PFAM):
C1:
PF087385=Gon7=PU(50.6=70.3)
A:
PF087385=Gon7=PD(47.2=53.2)
C2:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGACAGCTCAGACTCGGA
R:
ACGTTGTGGGCTTCAAGGTTT
Band lengths:
294-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]