DreEX0017292 @ danRer10
Exon Skipping
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18232566-18234094:-
Coord C1 exon
chr21:18234026-18234094
Coord A exon
chr21:18232943-18233160
Coord C2 exon
chr21:18232566-18232849
Length
218 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTGGCTCTCCCCAGCTG
3' ss Score
9
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
TGTATCTCTTTGGAGCACCCCATTGGTAGCAGAAAGGGGATAAAAAACGGGTGCACCAAGAATAATCAG
Seq A exon
CTGAAAGCCGTCCACGAACAGCTAGCTGCTCTTTCTCAGGCCCCTGTAAGTAAACCAAAGAAAAAGAAAGAGAAGAAAGAAAAAGATAAGAAAAAGAAAGAGAACAAGCACAACAAATCCAAGCCAGAGGAAAAAGCCAAGCCGGGACAGCCACCGAAACCAGCCCAGCAGAAAAAGGGTCCCACCAGAAAGGCTAACAGCACTGTTCCAGGAAACAG
Seq C2 exon
GCAACCAAAGAAGGGTGGCAGAGGGCCAGGCTATGAGTCTGACGAGGAGATGTCGCTCCCCATGACGTACGATGAGAAACGGCAACTGAGCCTCGACATTAACCGGCTGCCTGGAGAGAAGCTGGGTCGGGTGGTCCATATTATTCAGTCCAGAGAGCCTTCGCTGCGTGATTCCAACCCTGATGAAATTGAAATAGATTTTGAGACGCTGAAACCTTCCACTTTGCGAGAGCTGGAGCGATACGTCAAGTCCTGTTTACAAAAGAAACAGAGGAAACCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-'16-16,'16-14,18-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=1.000 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGGTAGCAGAAAGGGG
R:
AGGACTTGACGTATCGCTCCA
Band lengths:
305-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]