RnoEX0015110 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5999841-6004232:-
Coord C1 exon
chr3:6004041-6004232
Coord A exon
chr3:6002537-6002772
Coord C2 exon
chr3:5999841-6000133
Length
236 bp
Sequences
Splice sites
3' ss Seq
AGCTGCTTGCTTTTTCCTAGCTG
3' ss Score
5.67
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATGTGTTTGAGATGAGGTTTGCCAAGATGCCCGATGAGCCCATGGAGGTGCCTGCGCTGCCTGCTCCCACAGCCCCCATCGTGAGCAAAGGGGCTGAGAGCAGCCGTAGTAGCGAGGAGAGCTCTTCGGACTCAGGCAGCTCAGACTCTGAAGAGGAGCGAGCCACTCGGCTGGCAGAGCTGCAGGAGCAG
Seq A exon
CTGAAAGCCGTGCACGAACAGCTGGCCGCCTTGTCTCAGGCCCCAGTGAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAAAAGGAGAAGAAGAAGAAAGACAAGGAGAAGGAGAAGGAGAAGCACAAGGCCAAGTCCGAGGAGGAGAAGAAGGCCAAGGCAGCCCCAGCAGCCAAGCAGGCCCAGCAGAAGAAGGCTCCCACCAAGAAGGCCAATAGCACAACCACAGCCAGCAG
Seq C2 exon
ACAGCTCAAGAAGGGCGGCAAGCAGGCATCTGCATCCTATGACTCGGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAGAAGCGGCAACTCAGCCTCGACATCAACCGGCTGCCTGGCGAGAAGCTAGGTCGTGTGGTGCACATCATTCAGTCCCGGGAGCCTTCCCTTCGGGACTCGAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACACTTCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-'30-19,'30-17,35-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=1.000 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCAGCTCAGACTCTGAA
R:
CAGTTCCCGAAGTGTGGTTGG
Band lengths:
304-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]