HsaEX0008413 @ hg19
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:1104]
Coordinates
chr9:136899823-136907073:-
Coord C1 exon
chr9:136906882-136907073
Coord A exon
chr9:136905156-136905391
Coord C2 exon
chr9:136899823-136899951
Length
236 bp
Sequences
Splice sites
3' ss Seq
AGCCGCCCGCTCTTTTCCAGCTG
3' ss Score
7.84
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACGTGTTTGAGATGAGGTTTGCCAAGATGCCAGATGAGCCCGTGGAGGCACCGGCGCTGCCTGCCCCCGCGGCCCCCATGGTGAGCAAGGGCGCTGAGAGCAGCCGTAGCAGTGAGGAGAGCTCTTCGGACTCAGGCAGCTCGGACTCGGAGGAGGAGCGGGCCACCAGGCTGGCGGAGCTGCAGGAGCAG
Seq A exon
CTGAAGGCCGTGCACGAGCAGCTGGCCGCCCTGTCTCAGGCCCCAGTAAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAGAAGGAGAAGAAGAAGAAGGACAAGGAGAAGGAGAAGGAGAAGCACAAAGTGAAGGCCGAGGAAGAGAAGAAGGCCAAGGTGGCTCCGCCTGCCAAGCAGGCTCAGCAGAAGAAGGCTCCTGCCAAGAAGGCCAACAGCACGACCACGGCCGGCAG
Seq C2 exon
CAGCAAGCGGGAAGAAACAGGCAGCCAAGTCGAAAGAGGAGCTAGCTCAGGAAAAGAAGAAGGAGCTGGAAAAGCGTCTGCAGGATGTCAGCGGGCAGCTGAGCAGCAGCAAGAAGCCCGCCCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.844 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0093713=Corona_nucleoca=FE(46.0=100)
A:
PF0093713=Corona_nucleoca=PD(46.7=81.0)
C2:
PF084185=Pol_alpha_B_N=FE(37.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTTTGCCAAGATGCCAGA
R:
GGCTTCTTGCTGCTGCTCAG
Band lengths:
296-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)