HsaEX0008414 @ hg19
Exon Skipping
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:1104]
Coordinates
chr9:136899823-136905391:-
Coord C1 exon
chr9:136905156-136905391
Coord A exon
chr9:136901154-136901446
Coord C2 exon
chr9:136899823-136899951
Length
293 bp
Sequences
Splice sites
3' ss Seq
TGCTCTGTCTCCTGCCCCAGACA
3' ss Score
9.11
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CTGAAGGCCGTGCACGAGCAGCTGGCCGCCCTGTCTCAGGCCCCAGTAAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAGAAGGAGAAGAAGAAGAAGGACAAGGAGAAGGAGAAGGAGAAGCACAAAGTGAAGGCCGAGGAAGAGAAGAAGGCCAAGGTGGCTCCGCCTGCCAAGCAGGCTCAGCAGAAGAAGGCTCCTGCCAAGAAGGCCAACAGCACGACCACGGCCGGCAG
Seq A exon
ACAGCTGAAGAAAGGCGGCAAGCAGGCATCTGCCTCCTACGACTCAGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAAAAGCGCCAGCTTAGCCTGGACATCAACCGGCTGCCCGGGGAGAAGCTGGGCCGGGTAGTGCACATCATCCAATCTCGGGAGCCCTCGCTCAGGGACTCCAACCCCGACGAGATAGAAATTGACTTTGAGACTCTGAAACCCACCACTTTGCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAAAGGAAACCGTTCT
Seq C2 exon
CAGCAAGCGGGAAGAAACAGGCAGCCAAGTCGAAAGAGGAGCTAGCTCAGGAAAAGAAGAAGGAGCTGGAAAAGCGTCTGCAGGATGTCAGCGGGCAGCTGAGCAGCAGCAAGAAGCCCGCCCGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.919 C2=1.000
Domain overlap (PFAM):
C1:
PF0093713=Corona_nucleoca=PD(46.7=81.0)
A:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
C2:
PF084185=Pol_alpha_B_N=FE(37.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCAGGCCCCAGTAAACA
R:
CTGACATCCTGCAGACGCTTT
Band lengths:
296-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)