RnoEX0015111 @ rn6
Exon Skipping
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:5998810-6002772:-
Coord C1 exon
chr3:6002537-6002772
Coord A exon
chr3:5999841-6000133
Coord C2 exon
chr3:5998810-5998935
Length
293 bp
Sequences
Splice sites
3' ss Seq
TGGCTCGTCTTCTGCCTCAGACA
3' ss Score
6.91
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
CTGAAAGCCGTGCACGAACAGCTGGCCGCCTTGTCTCAGGCCCCAGTGAACAAACCAAAGAAGAAGAAGGAGAAGAAGGAAAAGGAGAAGAAGAAGAAAGACAAGGAGAAGGAGAAGGAGAAGCACAAGGCCAAGTCCGAGGAGGAGAAGAAGGCCAAGGCAGCCCCAGCAGCCAAGCAGGCCCAGCAGAAGAAGGCTCCCACCAAGAAGGCCAATAGCACAACCACAGCCAGCAG
Seq A exon
ACAGCTCAAGAAGGGCGGCAAGCAGGCATCTGCATCCTATGACTCGGAGGAAGAGGAGGAGGGCCTGCCCATGAGCTACGATGAGAAGCGGCAACTCAGCCTCGACATCAACCGGCTGCCTGGCGAGAAGCTAGGTCGTGTGGTGCACATCATTCAGTCCCGGGAGCCTTCCCTTCGGGACTCGAACCCAGACGAGATTGAGATTGACTTTGAGACCCTGAAGCCAACCACACTTCGGGAACTGGAGAGATATGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCATTGT
Seq C2 exon
CAACAAGCGGGAAGAAGCAGGCAGCCAAATCGAAAGAGGAGCTAGCTCAGGAGAAGAAAAAGGAGCTGGAGAAGCGGCTACAGGATGTCAGCGGACAACTGAACAGCAAGAAACCCACTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-'35-22,'35-19,36-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.909 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCCCCAGTGAACAAAC
R:
CTGACATCCTGTAGCCGCTTC
Band lengths:
293-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]