GgaEX1011192 @ galGal4
Exon Skipping
Gene
ENSGALG00000002682 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr17:7160621-7163645:-
Coord C1 exon
chr17:7163410-7163645
Coord A exon
chr17:7162595-7162887
Coord C2 exon
chr17:7160621-7160749
Length
293 bp
Sequences
Splice sites
3' ss Seq
ATGCTTGCCAATCTCCCCAGGCA
3' ss Score
7.43
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CTAAAGGCAGTCCATGAGCAGCTAGCTGCGTTATCACAAGCACCAGTGAACAAACCAAAGAAAAAAAAAGAGAAGAAGGAAAAAGAGAAGAAAAAGAAAGACAAAGAGAAGGAAAAGGAAAAGCACAAAGTAAAAGCTGAGGAGGAGAAGAAGCCTAAGGTGGCTCAACCACCGAAGCAAACCCAGCAGAAGAAAGCCCCAGCTAAAAAGGCAAACAGCACGACCACAGCTAGCAG
Seq A exon
GCAGCCCAAGAAAGGAGGAAAACAGGCATCTGCAACCTATGATTCGGATGAGGAGGAGGAAGGCCTGCCCATGACCTATGATGAGAAACGGCAGCTCAGCTTGGACATCAACCGCTTGCCTGGGGAGAAGCTGGGCCGAGTGGTGCACATCATCCAGTCACGGGAACCTTCCCTCAGGGACTCCAATCCTGATGAGATAGAAATAGATTTTGAAACCTTGAAGCCCACAACGTTGCGAGAACTGGAGAGATACGTGAAATCTTGTTTACAGAAAAAGCAAAGGAAACCATTTT
Seq C2 exon
CTGCAAGTGGAAAAAAGCAAGCAGCAAAGTCTAAAGAGGAGTTAGCTCAGGAAAAGAAGAAAGAACTAGAAAAACGGCTACAGGATGTCAGTGGGCAGTTAAACAACAACAAGAAACCTGCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002682_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=1.000
Domain overlap (PFAM):
C1:
PF087385=Gon7=PD(47.2=53.2)
A:
PF084185=Pol_alpha_B_N=PU(29.6=34.3)
C2:
PF084185=Pol_alpha_B_N=FE(37.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTATCACAAGCACCAGTG
R:
ACTGCCCACTGACATCCTGTA
Band lengths:
308-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]